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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggctatcgttcatgtctgggtggtcttatatgtgtatattcttgtttgctaatattatttccctgttatgtttatgtttaaatctctgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAAGTGATAATTCCCAATGCATATGGTGTGTCTTCCATACAGAATGCAAAAG

Basic information

species Glycine max
transcript GLYMA10G41920.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401220|gb|BM178002.1|BM178002
EST:     ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATCAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
genomic: ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAGgttggctatc ... tctgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
EST: gi|20812918|gb|BQ297396.1|BQ297396
EST:     ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTATTCCTATCAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTTGAACCCAAATTCCAAA
genomic: ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAGgttggctatc ... tctgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
EST: gi|58022687|gb|CX709428.1|CX709428
EST:     ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
genomic: ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAGgttggctatc ... tctgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
EST: gi|19346023|gb|BM890903.1|BM890903
EST:     ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAG                         A-TCCCGCTGAACTTG
genomic: ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAGgttggctatc ... tctgcaatagAATCCCGCTGAACTTG
EST: gi|298189813|gb|HO038216.1|HO038216
EST:     ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATCAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
genomic: ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAGgttggctatc ... tctgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
EST: gi|17401215|gb|BM177997.1|BM177997
EST:     ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATCAGAG                         AATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA
genomic: ATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAGgttggctatc ... tctgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttgtttgctaatattatttccctgttatgtttatgtttaaatctctgcaatagAATCCCGCTGAACTTGACAACTGGCTTGGCGATTTAAACCCAAATTCCAAAGTGATAATTCCCAATGCATATGGTGTGTCTTCCATACAGAATGCAAAAG
       tgctaat  putative branch site (score: 2)
                                           tctctgc  putative PPT
                          ttatgtttatgtttaa  TA-rich tract