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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttattcattttatgttacacttattcgtaccttataatttggcctcatcatctttattaaatatttgtatctttatttgataccctgtagCTTAGAGGTTTTGAATTCGTAAAAGCTGTCACTTTAGTGCTCGAACCATTTACGTTGGAAAATGGTCTGTTGACTCCGACATTCAAG

Basic information

species Glycine max
transcript GLYMA10G39540.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 21
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 3'ss of exon 21
gtaagttattcattttatgttacacttattcgtacctta--taatt--tggcctcatcatctttattaaatatttgtatctttatttgataccctgtagCTTAGAGGTTTTGAATTCGTAAAAGCTGTCACTTTAGTGCTCGAACCATTTACGTTGGAAAATGGTCTGTTGACTCCGACATTCAAG
    |  || ||| | |    ||| || |  |||  | |  || ||  |   ||||  | | | || |   ||||| ||  | |     |    || || | ||||| || || || | ||| ||||| || || ||||| |||||||||||  ||||||||||  ||||||||||||| ||||||
----gcaatacatctcagaaaacaattttctgtatatcagttagttactattctcaaaaacatgatgattgatttggatgataaaaatgtttggtgcagTTGAGAGGCTTCGAGTTTGCAAAGGCTGTGACATTGGTGCTGGAACCATTTACTCTGGAAAATGGCTTGTTGACTCCGACGTTCAAG

upper sequence: GLYMA10G39540.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv05s0020g03080.t01 (Vitis vinifera), 3'ss of exon 21
--------------------------gtaagttattcattttatgttacacttattcgtaccttataatttggcctcatcatcttta-ttaaatatttgtatctttatttgatacc-----ctgtagCTTAGAGGTTTTGAATTCGTAAAAGCTGTCACTTTAGTGCTCGAACCATTTACGTTGGAAAATGGTCTGTTGACTCCGACATTCAAG
                             |   |||  | |      | |  | ||   |||  ||  | | |  |||  || |  | ||   |  || ||| | | ||   |||      ||| || | |||||||||||||| |  |||||||| ||||| ||||| |||||||||||  |||| |||| |||| | ||||| |||||||||
gtaatctatctcatctctcataagaaaagaaacatttttgtctgaacaaaaatgttaaaaccagatcttctagtttcacaatgtgcagttcttttcttctatttattttatgtacatttcactgcagTTGAGAGGTTTTGAATTTGCCAAAGCTGTGACTTTGGTGCTTGAACCATTTACCATGGACAATGATCTGCTTACTCCAACATTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttggcctcatcatctttattaaatatttgtatctttatttgataccctgtagCTTAGAGGTTTTGAATTCGTAAAAGCTGTCACTTTAGTGCTCGAACCATTTACGTTGGAAAATGGTCTGTTGACTCCGACATTCAAG
                                       atttgat  putative branch site (score: 5)
           atcatctttattaaat  TA-rich tract