1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ggtttacatttgacattggtgtgtaaaaatttgctgaaatttggagtctttgaggaagaaattttttaatcatttttttctggcacttcacatatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG
species | Glycine max |
transcript | GLYMA10G35210.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|192334522|gb|FK024481.1|FK024481
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|207807592|gb|GD776611.1|GD776611
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGGTTGGGGGCGEST: gi|192334521|gb|FK024480.1|FK024480
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTG-TTGGGGGCG
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|192301842|gb|FG997700.1|FG997700
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|213605266|gb|DB978740.1|DB978740
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTCGTCTTTGTTGGGGGCGTEST: gi|120493752|gb|EH221919.1|EH221919
genomic: AGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|120493838|gb|EH222005.1|EH222005
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: TATCA-GGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|208086974|gb|GD883340.1|GD883340
genomic: TATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|208275482|gb|GE078186.1|GE078186
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTEST: gi|192303193|gb|FG997769.1|FG997769
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
gtctttgaggaagaaattttttaatcatttttttctggcacttcacatatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG
ttttaat putative branch site (score: 3)
aagaaattttttaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtttacatttgacattggtgtgtaaaaatttgctgaaatttggagtctttgaggaagaaattttttaatcatttttttctggcacttcacatatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG
- - - - - - - - tggtgtg
- - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - -gtctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacttca