Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaatgtttctcagtgatatatatatatatatattgcttgttgaatataactttcaagaatgtacaactgtactttcagagagaattagaacttaggaaaatgtaaaaagcacataatgaaatttgacagccataacaattttggatggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204575|gb|BI427343.1|BI427343
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|26058666|gb|CA801580.1|CA801580
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|17963254|gb|BM270005.1|BM270005
EST:     ATCTTTTTGGCGTTCAACAAATTTGTCGAAATGCTATTGCATTGGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACA
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACA
EST: gi|51342395|gb|CO983470.1|CO983470
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|15812288|gb|BI784563.1|BI784563
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|51337373|gb|CO981239.1|CO981239
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|254340255|gb|GR858380.1|GR858380
EST:     ATC-TTTTGGTGTTCAGCAAA-TTGTCGAAATGCTA-TGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|254341252|gb|GR854980.1|GR854980
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
EST: gi|13789586|gb|BG652177.1|BG652177
EST:     ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG                         GCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG
genomic: ATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGgtaattaatg ... ggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaaaagcacataatgaaatttgacagccataacaattttggatggtggtacagGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAG
                            ccataac  putative branch site (score: 3)
         acataatgaaattt  TA-rich tract