1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gttgtatttctatgtatcttctacttcaattcttgatcgctggggaagatgacatgattttacatgaaatactcattgactcattgttatcttttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG
species | Glycine max |
transcript | GLYMA10G02410.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGEST: gi|24205678|gb|BU964931.1|BU964931
genomic: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatttc ... ttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
EST: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGEST: gi|23064134|gb|BU578907.1|BU578907
genomic: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatttc ... ttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
EST: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTATGTGTC-CAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGEST: gi|208157183|gb|GD955869.1|GD955869
genomic: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatttc ... ttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
EST: TCGAAGCAATAGCAAATACGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGEST: gi|33389718|gb|CA852925.1|CA852925
genomic: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatttc ... ttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
EST: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGEST: gi|208169524|gb|GD972329.1|GD972329
genomic: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatttc ... ttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
EST: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGEST: gi|58023725|gb|CX710466.1|CX710466
genomic: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatttc ... ttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
EST: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAG AATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
genomic: TCGAAGCAATAGCAAATATGACTGATGGATATTCTGGGAGTGACCTAAAGgttgtatttc ... ttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAG
atgacatgattttacatgaaatactcattgactcattgttatcttttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG
cattgac putative branch site (score: 3)
ttatcttttc putative PPT
attttacatgaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtatttctatgtatcttctacttcaattcttgatcgctggggaagatgacatgattttacatgaaatactcattgactcattgttatcttttcactgcagAATCTATGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG