Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggccaagttgtttttaactagatttcagttatatatttgatttattttaatgcatcaatattctaatataaatatattacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAGCAGCAAAAAGGTGATTTCTGGCTTCATGTGGGCCAAGATGTGCATCCGG

Basic information

species Glycine max
transcript GLYMA09G00460.2
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098412|gb|HO760153.1|HO760153
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         GGAAAAATTTTGTTTGGTATACTGGTGAAACATGTTTCTATTGACGGAGAG
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
EST: gi|209697831|gb|BW670087.1|BW670087
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         GGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         C
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcag-
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         C
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcag-
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAG                         C
genomic: AAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACAGGAGGGTAAAGgttggccaag ... attacagcag-
EST: gi|213594870|gb|DB977212.1|DB977212
EST:     AAAGTCAAATGAACCTTTGGCAACTTTAGCCA-CCTACAGGAGGGTAAAG                         GGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG
genomic: AAAGTCAAATGAACCTTTGGCAACTTTAG-CATCCTACAGGAGGGTAAAGgttggccaag ... attacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatttgatttattttaatgcatcaatattctaatataaatatattacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAGCAGCAAAAAGGTGATTTCTGGCTTCATGTGGGCCAAGATGTGCATCCGG
                              ttctaat  putative branch site (score: 2)
         atttattttaatgcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttggccaagttgtttttaactagatttcagttatatatttgatttattttaatgcatcaatattctaatataaatatattacagcagGGAAAAATTTTGTTTGGTATACTGCTGAAACATGTTTCTATTGACGGAGAGCAGCAAAAAGGTGATTTCTGGCTTCATGTGGGCCAAGATGTGCATCCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG