1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
gtaacagctgtctgcctgtaaccagtttgtacttatgatttgagattttttatgttaatgcaaagttcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCTGATGCTCAG
species | Glycine max |
transcript | GLYMA08G22910.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|193510745|gb|FK466683.1|FK466683
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|14999140|gb|BI320223.1|BI320223
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|27427240|gb|CA938760.1|CA938760
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|15812260|gb|BI784535.1|BI784535
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
EST: TTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|19054194|gb|BM732861.1|BM732861
genomic: TTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|10239010|gb|BE807898.1|BE807898
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCEST: gi|26048827|gb|CA785280.1|CA785280
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
EST: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAG GTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
genomic: TAGGCATGGATGATTCCTCTATTCAAATATATAATGTCCGTGTTGATGAGgtaacagctg ... tcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTC
ccagtttgtacttatgatttgagattttttatgttaatgcaaagttcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCTGATGCTCAG
tgttaat putative branch site (score: 3)
ttcctttgc putative PPT
ttatgatttgagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagctgtctgcctgtaaccagtttgtacttatgatttgagattttttatgttaatgcaaagttcctttgcagGTTAAAAGTAAACTCAAAGGGCATACTAAAAGAATTACTGGTCTTGCTTTCTCTCATGTATTGAATGTATTAGTTTCATCTGGAGCTGATGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT