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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgatttgcctttgccttttccttttcagagaaattattgtttcttattcattgttaatcttgtttcatttcctaaaaaaatattgtcggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATATGGGAATCACGGTTGTTACTTCCTCACAA

Basic information

species Glycine max
transcript GLYMA08G14480.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270804|gb|BM887060.1|BM887060
EST:     TGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAA                         TGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT
genomic: TGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAAgtatgtatga ... ttgtcggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT
EST: gi|22932839|gb|BU549978.1|BU549978
EST:     CGCTTGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCANCAA                         TGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT
genomic: CGCTTGTTCTTTCACGAGCCCAAATTCGGTATCCTTGACGAGTGCACCAAgtatgtatga ... ttgtcggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcttattcattgttaatcttgtttcatttcctaaaaaaatattgtcggcagTGCAACTAGTGTTGATGTTGAAGAACACCTATACGGGCTTGCAAAAGATATGGGAATCACGGTTGTTACTTCCTCACAA
                                tcctaaa  putative branch site (score: 2)
                         tttcatttcctaaaaa  TA-rich tract