Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatattacccattttattctgttacgtgtccaaaattaatatatctattttaaattgatctgtgactcaatctcccttgtttattctgcttcttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACGATGGCAATAGTTAGGATGCCACTTGATGCTGTAGAGTGCTTATTTATA

Basic information

species Glycine max
transcript GLYMA08G01800.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193641846|gb|FK590656.1|FK590656
EST:     AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA                         GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: gi|51343289|gb|CO984022.1|CO984022
EST:     AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA                         GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: gi|193634007|gb|FK581115.1|FK581115
EST:     AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA                         GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: gi|21889656|gb|BQ742869.1|BQ742869
EST:     AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA                         GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: gi|208283984|gb|GE087290.1|GE087290
EST:     AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA                         GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: gi|20812721|gb|BQ297199.1|BQ297199
EST:     AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAA                         GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
genomic: AAGACCTTCTAGGCTTTCATTGAACAAAACCTCCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC
EST: gi|193660680|gb|FK606404.1|FK606404
EST:     AGACCTTCTAGGCTTTCATTGAACAAAACCTACCTCGAAGGTTCTGTCAA                         GTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAG-CCCCTAAAC
genomic: AGACCTTCTAGGCTTTCATTGAACAAAACCT-CCTCGAAGGTTCTGTCAAgtatgtatat ... ttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaaattgatctgtgactcaatctcccttgtttattctgcttcttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACGATGGCAATAGTTAGGATGCCACTTGATGCTGTAGAGTGCTTATTTATA
                                          ttcttac  putative branch site (score: 2)
                       tctcccttgtttattc  CT-rich tract
                             ttgtttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtatattacccattttattctgttacgtgtccaaaattaatatatctattttaaattgatctgtgactcaatctcccttgtttattctgcttcttacattcagGTGTTAGAAAACCTGCAGCCAGTAGCTCTTCTTCGGTGAAGCCCCCTAAACGATGGCAATAGTTAGGATGCCACTTGATGCTGTAGAGTGCTTATTTATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG