1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...gtaaccacttttgcatagaatcttcatatgcatcagtaaataattataagctattattttgttaactttttatataatttcgacaaacaaatttatgcagAAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTGCATTTGATTCTGCTGCCAATGGTCCAAGCGACTTGCCGTCTAGGTATGG
species | Glycine max |
transcript | GLYMA07G40300.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CAACAGAGCGTCTGCAGCATCCAATTGGTCTGATAAAGGGAGTGCAGCAG AAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTGEST: gi|42722542|gb|CK768441.1|CK768441
genomic: CAACAGAGCGTCTGCAGCATCCAATTGGTCTGATAAAGGGAGTGCAGCAGgtataagtct ... atttatgcagAAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTG
EST: CAACAGAGCGTCTGCAGCATCCAATTGGTCTGATAAAGGGAGTGCAGCAG AAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTGEST: gi|13252141|gb|BG363044.1|BG363044
genomic: CAACAGAGCGTCTGCAGCATCCAATTGGTCTGATAAAGGGAGTGCAGCAGgtataagtct ... atttatgcagAAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTG
EST: CAACAGAGCGTCTGCAGCATCCAATTGGTCTGATAAAGGGAGTGCAGCAG AAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTG
genomic: CAACAGAGCGTCTGCAGCATCCAATTGGTCTGATAAAGGGAGTGCAGCAGgtataagtct ... atttatgcagAAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTG
ataagctattattttgttaactttttatataatttcgacaaacaaatttatgcagAAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTGCATTTGATTCTGCTGCCAATGGTCCAAGCGACTTGCCGTCTAGGTATGG
tgttaac putative branch site (score: 2)
tattattttgttaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaccacttttgcatagaatcttcatatgcatcagtaaataattataagctattattttgttaactttttatataatttcgacaaacaaatttatgcagAAAGCAGCCCAGGAAGCTCTGGACCCTCATCAGTTGATGATTGGAGGTCTGCATTTGATTCTGCTGCCAATGGTCCAAGCGACTTGCCGTCTAGGTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- -accactt
- - - - - ttgcata
- - - - - - - - - - - - - tatgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaca