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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttcttttaccttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 21
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 21
-------------------gtaagctttctctaagctttcctccttattttctaatttccactgtttttatggtcaccaattttctttta-ccttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC
                    |     |||||||   |||| | | | |  || |||     || | | | |   ||||||| || ||||  ||   | |  ||||||||||||| ||||||||||| ||||||||||| || ||||| || |||  ||| |||||||||||||| ||| || | |||||
gtaaagattcttttattacctttaaattctctagattttctttcat-tcatccaatgggttctatatattttcacaccaatattgttttggccacttgtgcagGTGCGGATTGCTCAAGGTCTTGTCCATTTGGGAAAAGGATTATTGACTCTTGCTCCTTATCATTCCGATCGGTTCTTATTGTCACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193711290|gb|FK643885.1|FK643885
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGNTTGCCCAAGGTCTTGTACATTTGGGAA
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAA
EST: gi|7693027|gb|AW761125.1|AW761125
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCA
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCA
EST: gi|120530135|gb|EH258269.1|EH258269
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|193468156|gb|FK431799.1|FK431799
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAA
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAA
EST: gi|10847592|gb|BF070244.1|BF070244
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|6566730|gb|AW234362.1|AW234362
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|10237756|gb|BE806644.1|BE806644
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAAGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|10234169|gb|BE803057.1|BE803057
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTGGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|9440032|gb|BE440543.1|BE440543
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|22521874|gb|BU080685.1|BU080685
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|120492692|gb|EH220859.1|EH220859
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
EST: gi|120530034|gb|EH258168.1|EH258168
EST:     TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGC                         GTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT
genomic: TTCGCAATCTTTCAAGTTATTACTACAAGGATACCAGCCTTCTATTCTGCgtaagctttc ... ttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctaatttccactgtttttatggtcaccaattttcttttaccttatctatagGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGCTTATTAACCCTTAATCCATATCATTCCGATCGCTTCCTACTATCACC
  ttctaat  putative branch site (score: 2)
                                 ttttcttttaccttat  putative PPT
                               aattttctttta  TA-rich tract