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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attggttttagcaaaattgaaatgaaatgactccaagtgtcaattttttcgttgtaattgtgcacgattttttgtttaacctagtgtttctgaaatacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCAGCAAAATTTGGGAAAGATCCAAGATCTTATGAGGTATTGACTAAGCGGTTTGTGG

Basic information

species Glycine max
transcript GLYMA06G13280.2
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13280.1 (Glycine max), 3'ss of exon 22
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 21
--------------------------------------------------------------------------------attggttttagcaaaattgaaatgaaatgactccaagtgtc---aattttttcgttgtaattgt-gcacgattttt-tgtttaacctagt--gtttctgaaatacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCAGCAAAATTTGGGAAAGATCCAAGATCTTATGAGGTATTGACTAAGCGGTTTGTGG
                                                                                 ||  |   ||   |  |  |      | |  |||   | |   ||| | ||  ||| || | | | |  || |   ||||| |     |    ||||| | | |||||||||||||||| ||| || || ||||| ||||| |||| ||| || || || || ||||| ||||| || ||||| |||||||| ||||||||| | |
gttcaactcataaccctctccctctccctctccctctccctgttcacgttgctaaaatgctcttctactttaaatctatcgttactgcaagtggatgtataccttgcttagaccagtagcctgcaatgtgttgtttgcaagtctcggataatctaggtgttttattctcttaacttctggattgcagTGGCCTCGCATATTCCGTGTGGACTATGGACACCAGGAAGCTGCTGCCAAGTTCGGAAAAGACCCAAGGTCCTATGAAGTATTGACCAAGCGGTTTATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13789402|gb|BG651993.1|BG651993
EST:     CACAAACTAGAGCCCCAGGCAACCCTTGGCCACAG                         TGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCAGCAAAA
genomic: CACAAACTAGAGCCCCAGGCAACCCTTGGCCACAGgttagatcca ... tgaaatacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCAGCAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcgttgtaattgtgcacgattttttgtttaacctagtgtttctgaaatacagTGGCCTCGCATATACCGAGTAGATTATGGGCACCAAGAAGGTGCAGCAAAATTTGGGAAAGATCCAAGATCTTATGAGGTATTGACTAAGCGGTTTGTGG
                            gtttaac  putative branch site (score: 3)
                                       tgtttct  putative PPT
                     attttttgtttaa  TA-rich tract