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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagggtattcttaactacattaagagcctgcttatttgggaaaatctgactggttatttatttctcaactgtcgggggatgcagGGATGAAAGTGAATGGTGGATTTTCCCAGCTGGATTGGTTTTGTGTAAATTATTCCAGTCTCAACTCATTAATTGGCATGTTGCCAATCTGGAAATTCAA

Basic information

species Glycine max
transcript GLYMA06G09360.1
intron # 21
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09360.1 (Glycine max), 3'ss of exon 21
lower sequence: AT5G11700.2 (Arabidopsis thaliana), 3'ss of exon 23
gtaagggtattcttaactacattaaga-gcctgcttatttgggaaaatctgactggttatttatt------------tctcaac--tgtcgggggatgcagGGATGAAAGTGAATGGTGGATTTTCCCAGCTGGATTGGTTTTGTGTAAATTATTCCAGTCTCAACTCATTAATTGGCATGTTGCCAATCTGGAAATTCAA
    | || ||  || |||    |||  |     || | || || ||||| |    || ||| ||            |||  ||  | | ||||||||||||| |||||||||||||||||| |||||||| ||| ||||  |||||||  || | || || || ||||| ||| | ||||| || || ||||| || |||
--gtgagttttacta-ctatgcaaagttgtacctttctctgtgacaatcttatgttttgtttgttgggtttgtgatgtctgtacctttttgggggatgcagGGGTGAAAGTGAATGGTGGATATTCCCAGCAGGACTGGTCGTGTGTAAGATAATGCAATCGCAGCTCATAAATCGACATGTAGCAAACCTGGAGATACAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttatttgggaaaatctgactggttatttatttctcaactgtcgggggatgcagGGATGAAAGTGAATGGTGGATTTTCCCAGCTGGATTGGTTTTGTGTAAATTATTCCAGTCTCAACTCATTAATTGGCATGTTGCCAATCTGGAAATTCAA
              atctgac  putative branch site (score: 3)
                        ttatttatttctcaa  TA-rich tract