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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttattatgtaatttttagttgacaatcacgatagactaataatcttactactatttttactatgttctaatggtatctcttgctttggaattctgcagGAGACTAGAAAAGAACAAATTATCTGGGGATGTGTCTTCGCTTGCAAATTGCTTTAGTCTTTCTCTACT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207735464|gb|GD710307.1|GD710307
EST:     TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTT                         GAGACTAGAAAAGAACAAATTATCTGGGGATGTGTCTTCGCTTGCAAATTG
genomic: TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTgtaagcccct ... aattctgcagGAGACTAGAAAAGAACAAATTATCTGGGGATGTGTCTTCGCTTGCAAATTG
EST: gi|192296635|gb|FG991203.1|FG991203
EST:     TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTT                         GAGACTAGAAAAGAACAAATTATCTGGGGGATGTGTCTTCGCTTGCAAATT
genomic: TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTgtaagcccct ... aattctgcagGAGACTAGAAAAGAACAAATTATCTGGGG-ATGTGTCTTCGCTTGCAAATT
EST: gi|208110587|gb|GD910489.1|GD910489
EST:     TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTT                         GAGACTAGAAAAGAACAAATTATCCGGGGACGTGTC
genomic: TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTgtaagcccct ... aattctgcagGAGACTAGAAAAGAACAAATTATCTGGGGATGTGTC
EST: gi|208071387|gb|GD872988.1|GD872988
EST:     TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTT                         GAGACTAGAAAAGAACAAATTATCTAGGGGATGTGTACTTACGACTTGCAA
genomic: TCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTgtaagcccct ... aattctgcagGAGACTAGAAAAGAACAAATTATCT-GGGGATGTGT-CTT-CG-CTTGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttactactatttttactatgttctaatggtatctcttgctttggaattctgcagGAGACTAGAAAAGAACAAATTATCTGGGGATGTGTCTTCGCTTGCAAATTGCTTTAGTCTTTCTCTACT
                     ttctaat  putative branch site (score: 2)
     tactatttttactat  TA-rich tract