Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcactttattcagtacgattgaaatcctgtttaaagttattggttgtttttttagataatatattttctctttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGAACAGACGAAGGGTAAGGGAAAAGGGGCTCATCCATTTACTGGTTGGACA

Basic information

species Glycine max
transcript GLYMA05G27900.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193545762|gb|FK500853.1|FK500853
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|208182550|gb|GD980451.1|GD980451
EST:     GAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: GAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|7041994|gb|AW471888.1|AW471888
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|193673103|gb|FK618965.1|FK618965
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|207845237|gb|GD814834.1|GD814834
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|193333510|gb|FK297468.1|FK297468
EST:     CTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|193671515|gb|FK612041.1|FK612041
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|51334717|gb|CO978583.1|CO978583
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|254323179|gb|GR835787.1|GR835787
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|13788695|gb|BG651286.1|BG651286
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|12690707|gb|BG157043.1|BG157043
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
EST: gi|193716731|gb|FK654289.1|FK654289
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGTATTTTTGTGGGAACAGTACG
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGG-ATTTTTGTGGGAACAGTACG
EST: gi|5126438|gb|AI748174.1|AI748174
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGNGGATTTT-GTGGGAACAGTACG
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACG-GGATTTTTGTGGGAACAGTACG
EST: gi|209703470|gb|BW678247.1|BW678247
EST:     CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG                         AAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA
genomic: CAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAGgtattcactt ... tttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgtttaaagttattggttgtttttttagataatatattttctctttactgcagAAATATAGTGCGCAATTATCAACAGACGGGATTTTTGTGGGAACAGTACGAACAGACGAAGGGTAAGGGAAAAGGGGCTCATCCATTTACTGGTTGGACA
                                    tattttctctttact  CT-rich tract
     ttaaagttattggttg  TA-rich tract