1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaagtctcaacagtaatttaacatggctgtttgagttgttggctttagcctcttggcacttcagatgtggtttctgcttttgtttgcatcctgttgctagtatactatccatatctaagttttctccttctacaactgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATGCTCAATCTGCAGCTGCTGGCATTGCTGGTCTCATTGAGAATTCATCAT
species | Glycine max |
transcript | GLYMA05G08040.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGAT GTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATEST: gi|151401335|gb|EV271149.1|EV271149
genomic: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGATgtaagtctca ... tgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
EST: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGAT GTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATEST: gi|208321824|gb|GE124315.1|GE124315
genomic: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGATgtaagtctca ... tgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
EST: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGAT GTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATEST: gi|120532666|gb|EH260799.1|EH260799
genomic: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGATgtaagtctca ... tgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
EST: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGAT GTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATEST: gi|10252608|gb|BE820374.1|BE820374
genomic: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGATgtaagtctca ... tgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
EST: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGAT GTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATEST: gi|15000966|gb|BI321780.1|BI321780
genomic: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGATgtaagtctca ... tgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
EST: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGAT GTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATEST: gi|10709387|gb|BF009111.1|BF009111
genomic: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGATgtaagtctca ... tgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
EST: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGAT GTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
genomic: CTGAAGGAGCCCATTGCACTAAAGTGCGAGAGCTATTGAATAATTCTGATgtaagtctca ... tgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAAT
tgttgctagtatactatccatatctaagttttctccttctacaactgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATGCTCAATCTGCAGCTGCTGGCATTGCTGGTCTCATTGAGAATTCATCAT
tatactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtctcaacagtaatttaacatggctgtttgagttgttggctttagcctcttggcacttcagatgtggtttctgcttttgtttgcatcctgttgctagtatactatccatatctaagttttctccttctacaactgcgttccagGTTTGGAGTGCTTACAAAGACCAGAGGCATGATCTCTTCCTCCCTTCAAATGCTCAATCTGCAGCTGCTGGCATTGCTGGTCTCATTGAGAATTCATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT