1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gttgctggtgttctttttcctgttaccttattctttgaaattaatgttactattattcaatatttgatgcttgcccttatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAG
species | Glycine max |
transcript | GLYMA05G03270.1 |
intron # | 21 |
splice site | 3' |
intron type | U2 |
EST: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAG AATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGEST: gi|46492791|gb|CN472347.1|CN472347
genomic: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttgctggtg ... tatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAG
EST: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAG AATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGEST: gi|27426689|gb|CA938209.1|CA938209
genomic: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttgctggtg ... tatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAG
EST: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAG AATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGEST: gi|192328312|gb|FK020023.1|FK020023
genomic: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttgctggtg ... tatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAG
EST: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAG AATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAEST: gi|26048337|gb|CA784840.1|CA784840
genomic: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttgctggtg ... tatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGA
EST: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAG AATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAG
genomic: TAGATGCAGTAGCAAGTATGACTGATGGATATTCCGGAAGTGATCTTAAGgttgctggtg ... tatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAG
ctttgaaattaatgttactattattcaatatttgatgcttgcccttatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAG
cttgccctt CT-rich tract
aaattaatgttactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctggtgttctttttcctgttaccttattctttgaaattaatgttactattattcaatatttgatgcttgcccttatactgcagAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA