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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagatcattagatgtttaaaatgtcaatttagttgggatgaaataccattgaaggatttgaaattttacttaccttgagaaattgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG

Basic information

species Glycine max
transcript GLYMA01G01230.1
intron # 21
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58025193|gb|CX711934.1|CX711934
EST:     GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTG                         GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
genomic: GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcat ... ttgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
EST: gi|9902990|gb|BE611958.1|BE611958
EST:     GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTG                         GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
genomic: GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcat ... ttgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
EST: gi|58024062|gb|CX710803.1|CX710803
EST:     GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTG                         GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
genomic: GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcat ... ttgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
EST: gi|254321698|gb|GR825015.1|GR825015
EST:     GATTTCTCTGGCAGTATCCAACAGCTCGAGTTA-TTTATTTTTCTACTTG                         GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
genomic: GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcat ... ttgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
EST: gi|6567219|gb|AW234830.1|AW234830
EST:     GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTG                         GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
genomic: GATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcat ... ttgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
EST: gi|193674227|gb|FK619433.1|FK619433
EST:     ATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTG                         GTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
genomic: ATTTCTCTGGCAGTATCCAACAGCTCGAGTTATTTTATTTTTCTACTTGgtgagatcat ... ttgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaataccattgaaggatttgaaattttacttaccttgagaaattgcaaacagGTGTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG
                             tacttac  putative branch site (score: 1)
                  atttgaaattttactt  TA-rich tract