1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...agaaatttcatcattttattttgctgcaaagggttggtgttaatttatcgaagcagtctgcaacataaactgatactctgttttgtgggcatgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG
species | Glycine max |
transcript | GLYMA20G28200.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|9984323|gb|BE658431.1|BE658431
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|151400349|gb|EV270163.1|EV270163
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAG-AATAATG TATAATGATTTAGCACAACTTTGCA-TGATCCAAA-GCAAGGGCAGCTGTCEST: gi|6482302|gb|AW201571.1|AW201571
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|8286445|gb|BE024013.1|BE024013
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|21479843|gb|BQ576526.1|BQ576526
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAGCTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|21676461|gb|BQ628812.1|BQ628812
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|5761162|gb|AI966525.1|AI966525
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|192324238|gb|FK018209.1|FK018209
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|21993972|gb|BQ785500.1|BQ785500
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCEST: gi|6481851|gb|AW201122.1|AW201122
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
EST: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATG TATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
genomic: CTGTGGATCATGATAACTTGAAAGCATGGGCTGCTTCAGAAGGAATAATGgtagtataaa ... atgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTC
tatcgaagcagtctgcaacataaactgatactctgttttgtgggcatgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG
aactgat putative branch site (score: 3)
aacataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaatttcatcattttattttgctgcaaagggttggtgttaatttatcgaagcagtctgcaacataaactgatactctgttttgtgggcatgtgtgcagTATAATGATTTAGCACAACTTTGCAATGATCCAAAAGCAAGGGCAGCTGTCTTGGCTGAGATGGATGCTGCCGGACGAGAGGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - ttgctgc
- - - - - - - - - - - - - - - gggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaac