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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttttgaacccatagcttgctgtacatccttttctgattgacattctccttcaatacagtaattattctatttaataattgtagcagAAATGGTGTAGTTTGCACGAGTTGTGTTATTTACCAGCCAACCTGTATATATCTTCCTCTTCCCTCTCCGCTCAGCAACTGTATGATTGTAAGTATTTTC

Basic information

species Glycine max
transcript GLYMA17G08230.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495021|gb|EH223188.1|EH223188
EST:     TGACATTGATAACCAAAACGAAGAGAACTGCAATACACTGCAAAGTTTAG                         AAATGGTGTAGTTTGCACGAGTTGTGTTATTTACCAGCCAACCTGTATATA
genomic: TGACATTGATAACCAAAACGAAGAGAACTGCAATACACTGCAAAGTTTAGgtaacctttt ... attgtagcagAAATGGTGTAGTTTGCACGAGTTGTGTTATTTACCAGCCAACCTGTATATA
EST: gi|7285753|gb|AW598240.1|AW598240
EST:     TGACATTGATAACCAAAACGAAGAGAACTGCAATACACTGCAAAGTTTAG                         AAATGGTGTAGTTTGCACGAGTTGTGTTATTTACCAGCCAACCTGTATATA
genomic: TGACATTGATAACCAAAACGAAGAGAACTGCAATACACTGCAAAGTTTAGgtaacctttt ... attgtagcagAAATGGTGTAGTTTGCACGAGTTGTGTTATTTACCAGCCAACCTGTATATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgattgacattctccttcaatacagtaattattctatttaataattgtagcagAAATGGTGTAGTTTGCACGAGTTGTGTTATTTACCAGCCAACCTGTATATATCTTCCTCTTCCCTCTCCGCTCAGCAACTGTATGATTGTAAGTATTTTC
                 ttcaatacagtaatta  TA-rich tract