1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtaactcaaaacataaaatttctgtaaaaaggggaaacataaaacagtatttatcgactaaataggttctaataaaggtctttgtggtattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCCGTGTGTGGTGGCTATTTTTCGTCTATTATATTAGGAACAATTCGGTAT
species | Glycine max |
transcript | GLYMA17G07380.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|207821964|gb|GD796881.1|GD796881
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTTCTTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|151410382|gb|EV280197.1|EV280197
genomic: AAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGC-TTC-TGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|7588192|gb|AW703993.1|AW703993
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|208160487|gb|GD960435.1|GD960435
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|298173204|gb|HO020188.1|HO020188
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|18693005|gb|BM521853.1|BM521853
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|22524803|gb|BU083614.1|BU083614
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|18733023|gb|BM527382.1|BM527382
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|21887322|gb|BQ740535.1|BQ740535
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|151407803|gb|EV277618.1|EV277618
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|5175496|gb|AI759829.1|AI759829
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|10234449|gb|BE803337.1|BE803337
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|51335738|gb|CO979604.1|CO979604
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|208192569|gb|GD994169.1|GD994169
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|22525640|gb|BU084451.1|BU084451
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|20814470|gb|BQ298948.1|BQ298948
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|19934808|gb|BQ079838.1|BQ079838
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|193579689|gb|FK536374.1|FK536374
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|13252690|gb|BG363593.1|BG363593
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|7030028|gb|AW459811.1|AW459811
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|9903061|gb|BE612029.1|BE612029
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: GAAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|163921552|gb|EH039311.1|EH039311
genomic: G-AAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|192327522|gb|FK018198.1|FK018198
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|208062973|gb|GD860875.1|GD860875
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTCCTGTAGAAAGTAGAATCTAGCEST: gi|193547824|gb|FK505105.1|FK505105
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|22524847|gb|BU083658.1|BU083658
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCEST: gi|22932991|gb|BU550130.1|BU550130
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
EST: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAG GAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
genomic: AGAAGAAGGTCAAGGAATGGGGAGAACCAAAGGTTGCTTCTGCGAAACAGgtaactcaaa ... tattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGC
aacagtatttatcgactaaataggttctaataaaggtctttgtggtattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCCGTGTGTGGTGGCTATTTTTCGTCTATTATATTAGGAACAATTCGGTAT
ttctaat putative branch site (score: 2)
ttctaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcaaaacataaaatttctgtaaaaaggggaaacataaaacagtatttatcgactaaataggttctaataaaggtctttgtggtattttacagGAGCTAGCCGAGATGATCCTCCAATCTGTTCTGTAGAAAGTAGAATCTAGCCGTGTGTGGTGGCTATTTTTCGTCTATTATATTAGGAACAATTCGGTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG