1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...tacacataataaccacaaaaaaattattttattatttatgtgttgttatgcattattatcattatcatatttttgaggtttttaagggacttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTG
species | Glycine max |
transcript | GLYMA16G19560.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCA GAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTEST: gi|120530711|gb|EH258844.1|EH258844
genomic: ACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAgtatggtgac ... ttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTT
EST: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCA GAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTEST: gi|10845138|gb|BF068299.1|BF068299
genomic: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAgtatggtgac ... ttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTT
EST: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCA GAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTEST: gi|6481668|gb|AW200939.1|AW200939
genomic: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAgtatggtgac ... ttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTT
EST: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCA GAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTEST: gi|6482465|gb|AW201722.1|AW201722
genomic: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAgtatggtgac ... ttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTT
EST: CAGTTACACAATCAAACTCATTTGTTGGAACTGAAGAATACATTGCTCCC GAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTEST: gi|23728010|gb|BU762049.1|BU762049
genomic: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAgtatggtgac ... ttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTT
EST: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCA GAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTT
genomic: CAGTTACACAATCAAACTCATTCGTTGGAACTGAAGAATACATTGCTCCAgtatggtgac ... ttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTT
ttatgcattattatcattatcatatttttgaggtttttaagggacttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTG
acttgat putative branch site (score: 5)
attattatcattatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacacataataaccacaaaaaaattattttattatttatgtgttgttatgcattattatcattatcatatttttgaggtttttaagggacttgatatcagGAAATTATAACTGGAGCTGGGCATACTAGCGGTATAGATTGGTGGACCCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-acacata
- - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - tgcatta