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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagatctgattgcaatatagaatatatgacaattactgatacatgcagccatgttaaactgatacctttgaatagcttatcactgtaaaatcttgtggtaccgacatctttaatataattttgtagctgatctataaaaaaaaacagtaaaatcttgtggattctgaattattttttatcttctatgcagGCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTTTCTAACCAGAATTTACCGTGACTTATCAAAAATATTCCATCTAGGGCAT

Basic information

species Glycine max
transcript GLYMA16G08430.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|48575731|gb|CO036548.1|CO036548
EST:     GTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatct ... ttctatgcagGCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|22927943|gb|BU545082.1|BU545082
EST:     GTTTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTTTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatct ... ttctatgcagGCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTT
EST: gi|207705554|gb|GD689448.1|GD689448
EST:     GTTTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAG                         GCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTT
genomic: GTTTTTGTACATCTCTTCTTGATGTATCTCTTGCATCGCCTTCAGgtaaagatct ... ttctatgcagGCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaaaacagtaaaatcttgtggattctgaattattttttatcttctatgcagGCACAAGCTGACACATTGGCTGCTAGAGAAGTTGCAGAATCTATGGGACTTTCTAACCAGAATTTACCGTGACTTATCAAAAATATTCCATCTAGGGCAT
                                 ttattttttatcttct  CT-rich tract
 attctgaattattttt  TA-rich tract