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21 5' 3' |
gtaaatatcactttctaaaatcttttaactttgatttttttaatgtttcattggacactattaaactgcagactctatgaatttaattattgtttcattggacactttttcccagcagtttaataattaaatttgttgacttacatgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT
species | Glycine max |
transcript | GLYMA15G13380.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|254324398|gb|GR833823.1|GR833823
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: TTTAATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|58021487|gb|CX708228.1|CX708228
genomic: TTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|12689756|gb|BG156092.1|BG156092
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: GGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AGATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|31456933|gb|CD398961.1|CD398961
genomic: GGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: AATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|57575891|gb|CX548862.1|CX548862
genomic: AATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|21889070|gb|BQ742283.1|BQ742283
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|58025332|gb|CX712073.1|CX712073
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|19271184|gb|BM887440.1|BM887440
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AGATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|298194599|gb|HO043071.1|HO043071
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCEST: gi|6134477|gb|AW132870.1|AW132870
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
EST: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGATGCTACTAAA AAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
genomic: ATAATGGCAATGGTCATACTTGGTTTTAATGAATTTATGTTGCTACTAAAgtaaatatca ... tgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGC
gacactttttcccagcagtttaataattaaatttgttgacttacatgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT
gacttac putative branch site (score: 2)
tttaataattaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatatcactttctaaaatcttttaactttgatttttttaatgtttcattggacactattaaactgcagactctatgaatttaattattgtttcattggacactttttcccagcagtttaataattaaatttgttgacttacatgtgaaacagAAATCCTCTCTACCTGATGTTTATATTTGTTGCCTATCTACTCGGAAAGGCCATCTGGGTACAAATGGACATAGCTGGAGAGTTTCGACATGGCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA