Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaagtggaatgtggtgcatattttattcccctccttttccatttgcaccttttttgtttaaatgttgtttaatcttaattgtcttgggctccttttagGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGCATGCTATGTCTCAACGGAAACATTACGAATATCAAGTAGCACATGGTTAAGC

Basic information

species Glycine max
transcript GLYMA13G29180.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208259040|gb|GE057545.1|GE057545
EST:     AAACAAGAAGAACGAGAAACAGGGGTTGTCAGCTGGAATGTTCTACTGAG                         GTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGCATG
genomic: AAACAAGAAGAACGAGAAACAGGGGTTGTCAGCTGGAATGTTCTACTGAGgtaagaagat ... ctccttttagGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGCATG
EST: gi|193302386|gb|FK268248.1|FK268248
EST:     GGGTGGTCAGCTGGAATGTTCTACTGAG                         GTACAAGAATGCATTAGGAGGGTTTTGGGTGG-TTTTGTTACTCTTTGCAT
genomic: GGGTTGTCAGCTGGAATGTTCTACTGAGgtaagaagat ... ctccttttagGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTG-TACTCTTTGCAT
EST: gi|208285368|gb|GE083410.1|GE083410
EST:     AAACAAGAAGAACAAGAAACAGGGGTTGTCAGCTGGAATGTTCTACTGAG                         GTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGC
genomic: AAACAAGAAGAACGAGAAACAGGGGTTGTCAGCTGGAATGTTCTACTGAGgtaagaagat ... ctccttttagGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaccttttttgtttaaatgttgtttaatcttaattgtcttgggctccttttagGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGCATGCTATGTCTCAACGGAAACATTACGAATATCAAGTAGCACATGGTTAAGC
                             tcttaat  putative branch site (score: 3)
                                             ctcctttt  putative PPT
      ttttttgtttaaatgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agaaagtggaatgtggtgcatattttattcccctccttttccatttgcaccttttttgtttaaatgttgtttaatcttaattgtcttgggctccttttagGTACAAGAATGCATTAGGAGGGTTTTGGGTGGTTTTTGTACTCTTTGCATGCTATGTCTCAACGGAAACATTACGAATATCAAGTAGCACATGGTTAAGC

- - - - - -tgtggtg
- - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg