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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattaacgtccataatcttatgtcagcactgttcttctttgcttcgcaacagtgtaaaatggaataatgatgatgtgtgtattttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTATCCAGGGCTTAATTGAGTTAATTATGAATGAAATGCAGAGCGACACCACA

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253912|gb|BE821727.1|BE821727
EST:     GCANNAGGTAGCANCGGATCAGTAATGCNNTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAANNNTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|254331690|gb|GR843540.1|GR843540
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|11411507|gb|BF423518.1|BF423518
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|31464944|gb|CD406972.1|CD406972
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|7327057|gb|AW620855.1|AW620855
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|14011053|gb|BG725975.1|BG725975
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACC
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACC
EST: gi|15287609|gb|BI471500.1|BI471500
EST:     ACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: ACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
EST: gi|151396647|gb|EV265275.1|EV265275
EST:     GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAA                         GTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT
genomic: GCACGAGGTAGCACCGGATCAGTAATGCTCTTCATTGAGATATTGAACAAgtaagattaa ... ttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcttcgcaacagtgtaaaatggaataatgatgatgtgtgtattttttttctagGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCGGCTATCCAGGGCTTAATTGAGTTAATTATGAATGAAATGCAGAGCGACACCACA
                                       tgtattttttttct  CT-rich tract
                                       tgtattttttttcta  TA-rich tract