1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtttgccaactttgctgattctgctggttaaaaatagtctacaagagttggtaagatcagattggtgatctatgcaattttgttttttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAG
species | Glycine max |
transcript | GLYMA10G41920.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TTCTTGAAATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAACCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGEST: gi|20812918|gb|BQ297396.1|BQ297396
genomic: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAG
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGEST: gi|58022687|gb|CX709428.1|CX709428
genomic: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAG
EST: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGEST: gi|19346023|gb|BM890903.1|BM890903
genomic: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAG
EST: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGEST: gi|298189813|gb|HO038216.1|HO038216
genomic: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAG
EST: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGEST: gi|298164021|gb|HO013666.1|HO013666
genomic: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAG
EST: TTCTTGAAATTCGAGCCGAGTATGATCCTTCAAAGAAGACCAAGCCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTEST: gi|17401215|gb|BM177997.1|BM177997
genomic: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCT
EST: TTCTTGAAATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAACCTAAG GGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAG
genomic: TTCTTGAGATTCGAGCAGAGTATGATCCTTCAAAGAAGACCAAGCCTAAGgtttgccaac ... ttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAG
caagagttggtaagatcagattggtgatctatgcaattttgttttttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAG
ttttgttttttgtttt CT-rich tract
aattttgttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgccaactttgctgattctgctggttaaaaatagtctacaagagttggtaagatcagattggtgatctatgcaattttgttttttgtttttagGGGGTTCTCCATTGGGTTGCTCAACCTTCTCCTGGAGTTGATCCATTAAAGGTGGAAGTCAGATTGTTTGAGAGGCTGTTCCTATTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT