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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttacatttgacattggtgtgtaaaaatttgctgaaatttggagtctttgaggaagaaattttttaatcatttttttctggcacttcacatatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG

Basic information

species Glycine max
transcript GLYMA10G35210.2
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35210.2 (Glycine max), 3'ss of exon 20
lower sequence: LOC_Os04g14654.1 (Oryza sativa), 3'ss of exon 21
ggtttacatttgacattggtgtgtaaaaatttgctgaaatttggagt-ctttgaggaagaaattttttaatcatttttttctggcacttcacatatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG
   || ||||| |||| ||    ||    | |  | |||||   | | ||| |  | |    | || |  |||| | ||| |      | || | | |  |       | ||||   ||| || ||||  | ||||||||| |||| || ||||| |||||||||||| |||| ||||||||  |  || |||||
---ttgcattt-acat-ggaaaatactgttcttgtcaaattcctaatacttcgtagcatgtttcttctcttcatctgtttttatt--ctaacgtgtgtttgttctagGGTTGGACATCGTTCTCTGGTTTTGGTTGTCTTTATTGGTGGGGTTACTTTTGCAGAGATTGCTGCTCTTCGATTCCTTAGTTCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303192|gb|FG997768.1|FG997768
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|192334522|gb|FK024481.1|FK024481
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|207807592|gb|GD776611.1|GD776611
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGGTTGGGGGCG
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTG-TTGGGGGCG
EST: gi|192334521|gb|FK024480.1|FK024480
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|192301842|gb|FG997700.1|FG997700
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|213605266|gb|DB978740.1|DB978740
EST:     AGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTCGTCTTTGTTGGGGGCGT
genomic: AGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|120493752|gb|EH221919.1|EH221919
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|120493838|gb|EH222005.1|EH222005
EST:     TATCA-GGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: TATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|208086974|gb|GD883340.1|GD883340
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|208275482|gb|GE078186.1|GE078186
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
EST: gi|192303193|gb|FG997769.1|FG997769
EST:     AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAA                         AGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT
genomic: AATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAgtatgtttac ... catatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttgaggaagaaattttttaatcatttttttctggcacttcacatatttcagAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAG
                  ttttaat  putative branch site (score: 3)
          aagaaattttttaatc  TA-rich tract