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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgattcttttttagagtttttctttaatgtttggagctgtatttttcagttaaatcatttctatcacttcctttcttttactgctaatgatagagtgctcttattttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG

Basic information

species Glycine max
transcript GLYMA10G35190.2
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35190.2 (Glycine max), 3'ss of exon 20
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 21
------------------------------gtgtgattcttttttagagtttttctttaatgtttggagctgtatttttcagttaaatcattt----------ctatcac-ttcctttcttttactgctaatgatagagtgctcttattttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG
                               ||  |||  ||  |    |   |   | || |||     |||| || | | | |||||| ||          |||| |  ||||||   |  ||   |||| | ||| | |   | ||||     ||||||||||| || ||||||||||| || |||||||| |||||||| || ||||| ||| | |||||||| ||||||
gtttgcatgttcccaacaatttgggtcaatttgaaatttattcgtgccttccattgcttatttttcagattgtagttctaattgaaatcaattgtagtggcacctattatgttccttgtatgcaccattaatcagagaatacaaatgtttt----atagGCTTTGGCTGACATGAAATCCATCAACCTTTTTGGGGTTCAGCAGATATGTCGGAATTCAATTGCATTGGAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204575|gb|BI427343.1|BI427343
EST:     ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG                         GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: gi|26058666|gb|CA801580.1|CA801580
EST:     ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG                         GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: gi|17963254|gb|BM270005.1|BM270005
EST:     ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTTAAG                         GCTTTGGCAGATATGAAATCCATAAATCTTTTTGGCGTTCAACAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: gi|51342395|gb|CO983470.1|CO983470
EST:     ATTATATATTTGGTGGAANNNGTGGGGTTGCAGCAAATGCATCTGTCAAG                         GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: gi|15812288|gb|BI784563.1|BI784563
EST:     ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG                         GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: gi|51337373|gb|CO981239.1|CO981239
EST:     ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG                         GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: gi|254341252|gb|GR854980.1|GR854980
EST:     GCAAATGCATCTGTCAAG                         GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: GCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
EST: gi|13789586|gb|BG652177.1|BG652177
EST:     ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAG                         GCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT
genomic: ATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGgtgtgattct ... ttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatcacttcctttcttttactgctaatgatagagtgctcttattttcttattagGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAG
                     tgctaat  putative branch site (score: 2)
                                     ctcttattttcttatt  putative PPT
                                      tcttattttcttatta  TA-rich tract