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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctcttaatgtagatttttaggctactaggctttcaccttatcagttattataattataactgcgtaaccctttctttcgaacttttggcagTTTCAACCTGTGCTGGTAGAGCAAGATCAGGACAAAACAGAGAATCGGAAATCAGGAAAACGTAATGCACGAACTCAGGTTAATCCAAACCCTGATCCAG

Basic information

species Glycine max
transcript GLYMA10G27810.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5510254|gb|AI856638.1|AI856638
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTGTATCAG                         TTTCAACCTGTGCTGGTAGAGCAAGATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTGTATCAGgtttgctctt ... cttttggcagTTTCAACCTGTGCTGGTAGAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|207839425|gb|GD811242.1|GD811242
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTGTATCAG                         TTTCAACCTGTGCTGGTAGAGCAAGATCAGGACAAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTGTATCAGgtttgctctt ... cttttggcagTTTCAACCTGTGCTGGTAGAGCAAGATCAGGACAAAACAGAGAATCGGAAA
EST: gi|7686650|gb|AW757307.1|AW757307
EST:     TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTGTATCAG                         TTTCAACCTGTGCTGGTAGAGCAAGATCATGACTAAACAGAGAATCGGAAA
genomic: TGGATATGATGGCACAAATAAGAAGAAATGTCATATATTCTGTGTATCAGgtttgctctt ... cttttggcagTTTCAACCTGTGCTGGTAGAGCAAGATCAGGACAAAACAGAGAATCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatcagttattataattataactgcgtaaccctttctttcgaacttttggcagTTTCAACCTGTGCTGGTAGAGCAAGATCAGGACAAAACAGAGAATCGGAAATCAGGAAAACGTAATGCACGAACTCAGGTTAATCCAAACCCTGATCCAG
                                             ctttt  CT-rich tract
      agttattataattata  TA-rich tract