1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ctataaccttcattattgtttctttgtggttgtgttgtcattattctgttccattattctattataatcagttctcaattaaccctttgccttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAGAAGCTTTAGCCGCTTTAAACTCTGCATTTAATTCATCATCTGGGACGA
species | Glycine max |
transcript | GLYMA10G21350.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTG GCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAEST: gi|33390214|gb|CA853421.1|CA853421
genomic: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTGgtatgcttac ... cttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCA
EST: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTG GCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAEST: gi|208211527|gb|GE014030.1|GE014030
genomic: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTGgtatgcttac ... cttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCA
EST: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTG GCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAEST: gi|16348583|gb|BI974178.1|BI974178
genomic: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTGgtatgcttac ... cttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCA
EST: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTG GCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAEST: gi|9565885|gb|BE475394.1|BE475394
genomic: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTGgtatgcttac ... cttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCA
EST: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTG GCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAEST: gi|208059837|gb|GD859043.1|GD859043
genomic: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTGgtatgcttac ... cttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCA
EST: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTG GCACAAGATAGATTGAATGGGTTAGG
genomic: CTGCCTTATCTAATGCATTTGGTTCATCTTCTGAGAAAGCATCCGGTTTGgtatgcttac ... cttcttgcagGCACAAGATAGATTGAATGGGTTAGG
ctgttccattattctattataatcagttctcaattaaccctttgccttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAGAAGCTTTAGCCGCTTTAAACTCTGCATTTAATTCATCATCTGGGACGA
aattaac putative branch site (score: 2)
ccctttgccttcttgc CT-rich tract
attattctattataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctataaccttcattattgtttctttgtggttgtgttgtcattattctgttccattattctattataatcagttctcaattaaccctttgccttcttgcagGCACAAGATAGATTGAATGGGTTAGGCCAAGGGGGACCAAGGCAAAGGGCAGAAGCTTTAGCCGCTTTAAACTCTGCATTTAATTCATCATCTGGGACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -accttca
- - - - - - - - - - - - - -ggttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttgc