1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...ggattttctttcagtattattttattcaatctgtaaccaggtaacattgaataaacaaaattgaccccttggtttataaacaagttatcatatgtttcagGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTTCTGTCCGACTTTATGATGTCAGAACACCTGATAT
species | Glycine max |
transcript | GLYMA09G41510.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTG GCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTEST: gi|15201009|gb|BI424645.1|BI424645
genomic: AATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTGgtaagcctca ... tatgtttcagGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGT
EST: AGCTTGTCAATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTG GCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTEST: gi|8282914|gb|BE020475.1|BE020475
genomic: AGCTTGTCAATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTGgtaagcctca ... tatgtttcagGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGT
EST: AGCTTGTCAATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTG GCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGT
genomic: AGCTTGTCAATTCTAAATCTTCATCATCAGATTGCAGTGTCTCAGCATTGgtaagcctca ... tatgtttcagGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGT
attgaataaacaaaattgaccccttggtttataaacaagttatcatatgtttcagGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTTCTGTCCGACTTTATGATGTCAGAACACCTGATAT
aattgac putative branch site (score: 3)
tttataaacaagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggattttctttcagtattattttattcaatctgtaaccaggtaacattgaataaacaaaattgaccccttggtttataaacaagttatcatatgtttcagGCTGCATCTCAAGTTCATGGGGGACAATTTACAGCTGGTTTCATAGATGGTTCTGTCCGACTTTATGATGTCAGAACACCTGATAT
- - - - - - - - - - - - - - - -tgtaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaacaag