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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcattctgttatatgtatccattatggatatcattgcctcaagcaattttgtactgatataacattgtataatgcagGAGAATCTGAAATTATTATTGAAGTATTTAGTTGATTCTTTCTGGGACCAGTTAGTGAAATTTGAGTATTTGGTTTCCATTCATTCACTGAAAGTAAAAT

Basic information

species Glycine max
transcript GLYMA09G04260.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207786195|gb|GD758602.1|GD758602
EST:     ACAATCTGCTCAACTCTGCTGTTCTTGAACTTTTCGAGTATATTAGAAAG                         GAGAATCTGAAATTATTATTGAAGTATTTAGTTGATCCTTTCTGGGACCAG
genomic: ACAATCTGCTCAACTCTGCTGTTCTTGAACTTTTCGAGTATATTAGCAAGgtatcattct ... tataatgcagGAGAATCTGAAATTATTATTGAAGTATTTAGTTGATTCTTTCTGGGACCAG
EST: gi|193674287|gb|FK615223.1|FK615223
EST:     GTATATTAGCAAG                         GAGAATCTGAAATTATTATTGAAGTATTTAGTTGATTCTTT
genomic: GTATATTAGCAAGgtatcattct ... tataatgcagGAGAATCTGAAATTATTATTGAAGTATTTAGTTGATTCTTT
EST: gi|193530652|gb|FK484933.1|FK484933
EST:     ACAATCTGCTCAACTCTGCTGTTCTTGAACTTTTCGAGTATATTAGCAAG                         GAGAATCTGAAATTATTATTGAAGTATTTAGTTGATTCTTTCTGGGACCAG
genomic: ACAATCTGCTCAACTCTGCTGTTCTTGAACTTTTCGAGTATATTAGCAAGgtatcattct ... tataatgcagGAGAATCTGAAATTATTATTGAAGTATTTAGTTGATTCTTTCTGGGACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggatatcattgcctcaagcaattttgtactgatataacattgtataatgcagGAGAATCTGAAATTATTATTGAAGTATTTAGTTGATTCTTTCTGGGACCAGTTAGTGAAATTTGAGTATTTGGTTTCCATTCATTCACTGAAAGTAAAAT
                                  atataacattgtataa  TA-rich tract