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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccttcatacagctgtatgcactacttgtagagaacaatatttcttttgcttaattttggggatttgattgtttgacctctctctctctcaattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACA

Basic information

species Glycine max
transcript GLYMA09G00460.2
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098412|gb|HO760153.1|HO760153
EST:     ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGT                         TCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
genomic: ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGTgtaagtgcaa ... aattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
EST: gi|209697831|gb|BW670087.1|BW670087
EST:     ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGT                         TCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
genomic: ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGTgtaagtgcaa ... aattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
EST: gi|22932848|gb|BU549987.1|BU549987
EST:     ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGT                         TCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
genomic: ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGTgtaagtgcaa ... aattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgcttaattttggggatttgattgtttgacctctctctctctcaattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACA
                         gtttgac  putative branch site (score: 4)
                               cctctctctctctcaa  CT-rich tract
     ttaatttt  TA-rich tract