1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...tccttcatacagctgtatgcactacttgtagagaacaatatttcttttgcttaattttggggatttgattgtttgacctctctctctctcaattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACA
species | Glycine max |
transcript | GLYMA09G00460.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGT TCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGEST: gi|214006397|gb|DB986145.1|DB986145
genomic: ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGTgtaagtgcaa ... aattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
EST: GCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGAATTTCAGT TCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGEST: gi|22932848|gb|BU549987.1|BU549987
genomic: GCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGTgtaagtgcaa ... aattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
EST: ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGT TCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
genomic: ATGCTGAAGATGGATGGAGATACATTAGGATTGGAAACAAGTATTTCAGTgtaagtgcaa ... aattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCG
tttgcttaattttggggatttgattgtttgacctctctctctctcaattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACA
gtttgac putative branch site (score: 4)
cctctctctctctcaa CT-rich tract
ttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttcatacagctgtatgcactacttgtagagaacaatatttcttttgcttaattttggggatttgattgtttgacctctctctctctcaattcaccagTCGCTTGGGGGATGTAATCGATGCCAGATAATCAACCTTACAATAAATGCGGGACAAGTGCAAAAGTCAAATGAACCTTTGGCAACTTTAGCATCCTACA
- - tcataca
- - - - - - - gtatgca
- - - - - - - - - - -ctacttg
- - - - - - - - - - - - - - - - - - - - - -cttttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgggg