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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaacttacaattagaaagcctacattgttaaatgggtttgcatgattttgttcgtttgagctaacacgtatgctttccaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTACTGATTTGTATTTCCCCACCAAGTATTCTCAATCCACATTGGGGCAATTT

Basic information

species Glycine max
transcript GLYMA08G21540.2
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23731165|gb|BU763691.1|BU763691
EST:     CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTATTCCA                         GCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC
genomic: CGTCTTGGAATGGACTTTGCTGAATACTACAAAACATCATCTTTATTCCAgtaagtcaac ... ttccaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgggtttgcatgattttgttcgtttgagctaacacgtatgctttccaaacagGCGAAACAAAGCTCTTGTAAAGGAGTTAAGCACACCCCCGCCTGGAGCTACTGATTTGTATTTCCCCACCAAGTATTCTCAATCCACATTGGGGCAATTT
                             agctaac  putative branch site (score: 2)
                                         tgctttcc  putative PPT
            atgatttt  TA-rich tract