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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatgtgcatcaattctcatttacatgcctttttatgcaatgaactaagaattcattagttgcttgaatgatttcacagatgtatattttaatattactgtttcattcagGGATCATGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTCTTATGGACCAACTATGGATTACGTTCACTTGGCAAAACAAG

Basic information

species Glycine max
transcript GLYMA08G10870.2
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072964|gb|AW102351.1|AW102351
EST:     ACATTGGTTACGTTAGTTTATTCCCATTCATGGGGAGGATCATTCCATCT                         GGATCATGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC
genomic: ACATTGGTTACGTTAGTTTATTCCCATTCATGGGGAGGATCATTCCATCTgtaaggatgt ... tttcattcagGGATCATGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagttgcttgaatgatttcacagatgtatattttaatattactgtttcattcagGGATCATGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATCGCAGCCTCTTATGGACCAACTATGGATTACGTTCACTTGGCAAAACAAG
                               ttttaat  putative branch site (score: 3)
                                             tttcattc  putative PPT
                        atgtatattttaatat  TA-rich tract