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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagttgcttcctgtgattaaatctaactctactcaatcatcagttttaaattttagctaatttctctcttgttattcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGTTATTTTTGTTGGAATTAACAATTGCCAAACTGTTCAACCAATTGTAGCC

Basic information

species Glycine max
transcript GLYMA07G01860.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406392|gb|EV276207.1|EV276207
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTCTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|15001087|gb|BI321901.1|BI321901
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|14009025|gb|BG725629.1|BG725629
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|151401523|gb|EV271337.1|EV271337
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTCTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|16995911|gb|BM085283.1|BM085283
EST:     GGGACAGTATTTTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGATCTGACAATGATTATAGGAGCAATGTATGCTGCTGT
genomic: GGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|10231389|gb|BE800277.1|BE800277
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|192328785|gb|FK022557.1|FK022557
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|21888177|gb|BQ741390.1|BQ741390
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
EST: gi|9564838|gb|BE474347.1|BE474347
EST:     GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAG                         GGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT
genomic: GCTTGTGCCCTCATGATAGGGACAGTATTTTGGAGAATTGGCAAAAACAGgtgagagttg ... tcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcaatcatcagttttaaattttagctaatttctctcttgttattcttgtttagGGAGAGCTCAGCTGACCTGACAATGATTATAGGAGCCATGTATGCTGCTGTTATTTTTGTTGGAATTAACAATTGCCAAACTGTTCAACCAATTGTAGCC
                        agctaat  putative branch site (score: 3)
                              tttctctcttgttatt  CT-rich tract
           agttttaaattttagc  TA-rich tract