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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattaataaaagtaataattctttcatcgttgtccttgtacttctacattatctgcggcatcaaatgtgcttgtgaataatatggtttttgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGAAGTTCATTTTTGTGTGGAGTTTTTGTTTCTACATTTATTCTGATTAAAT

Basic information

species Glycine max
transcript GLYMA06G36130.2
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669099|gb|BE190201.1|BE190201
EST:     GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG                         ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
EST: gi|22934204|gb|BU551343.1|BU551343
EST:     GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG                         ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
EST: gi|17401659|gb|BM178441.1|BM178441
EST:     GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG                         ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
EST: gi|13562361|gb|BG550581.1|BG550581
EST:     GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG                         ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
EST: gi|7234399|gb|AW569737.1|AW569737
EST:     GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG                         ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
EST: gi|7591193|gb|AW706931.1|AW706931
EST:     GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAG                         ATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA
genomic: GTTCATTCAAATAGCAATTTAAGCCCTCTTGCAAGATTTCTTCTCTCAAGgtttgtggaa ... tgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattatctgcggcatcaaatgtgcttgtgaataatatggtttttgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGAAGTTCATTTTTGTGTGGAGTTTTTGTTTCTACATTTATTCTGATTAAAT
                                         tttttgtttt  CT-rich tract
                               aataatatggtttttg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattaataaaagtaataattctttcatcgttgtccttgtacttctacattatctgcggcatcaaatgtgcttgtgaataatatggtttttgttttacagATGGCAAGGCCAAACCTCGCGGGATCTAAATCCAGCTTGAGCGGACTTAGAAGTTCATTTTTGTGTGGAGTTTTTGTTTCTACATTTATTCTGATTAAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG