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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaaattgagattgatgattatacttatctttgctgattagcctaatgtgctgagaatactgttttctcttttatgttgcagTTCTTGTATGAACCCTTCCCGGTTGAGAGTAGTTTGAGAGAGCAGTTGCATGATCACATTAATGCCGAAATTATTTCTGGAACCATTTGCCATAAACAAG

Basic information

species Glycine max
transcript GLYMA06G21970.1
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G21970.1 (Glycine max), 3'ss of exon 20
lower sequence: LOC_Os03g11470.1 (Oryza sativa), 3'ss of exon 18
------------gtcaaaattgagattgatgattatacttatctttgctgattagcctaatgtgctgagaatactgttttctcttttatgttgcagTTCTTGTATGAACCCTTCCCGGTTGAGAGTAGTTTGAGAGAGCAGTTGCATGATCACATTAATGCCGAAATTATTTCTGGAACCATTTGCCATAAACAAG
             |    | |  |  ||   |  | || |     |||  |||   || | ||      || | ||  |  | |  |||  | |||||| |||||||||| ||||| ||||| |||| | | || ||||| |||||||||||||| ||||| || ||| |||| || || ||  |  ||||| | |
gtttcatattactttttcactttgtctgcctaacaaacattctaatgcatatttatctgaagttt----aacaatgaatattgtaatattct-cagTTCCTGTATGAACCATTCCCTGTTGAAAGTAATCTAAGGGAGCACTTGCATGATCACATAAATGCGGAGATTGTTTCCGGCACTATCAGTAATAAAGAGG

upper sequence: GLYMA06G21970.1 (Glycine max), 3'ss of exon 20
lower sequence: Vv17s0000g07230.t01 (Vitis vinifera), 3'ss of exon 25
----------------------------gtcaaaattgagattgatgattat--acttatctttgctgattagcctaatgtgctgagaatactgttttctcttttatgttgcagTTCTTGTATGAACCCTTCCCGGTTGAGAGTAGTTTGAGAGAGCAGTTGCATGATCACATTAATGCCGAAATTATTTCTGGAACCATTTGCCATAAACAAG
                             | | ||  || ||  ||||| ||  |   || |||| || | | | |  ||    ||  |   |||  ||| || ||| ||||||||| | |||||||| || || |||||||||||| |||| ||||| || ||||||||||| ||||| || ||  |||||||||| ||||| |||||| | |
gtcaatgaaataaagttttgttgttattataataaaagaaatgcatgatcattgagcgatatttgttgctaaacttcctg----gaacaacttgtgatcttttctat-ttgcagTTCCTTTATGAACCATTTCCAGTTGAGAGTAGTCTGAGGGAGCACTTTCATGATCACATCAATGCAGAGATAGTTTCTGGAACAATTTGTCATAAAGAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttgctgattagcctaatgtgctgagaatactgttttctcttttatgttgcagTTCTTGTATGAACCCTTCCCGGTTGAGAGTAGTTTGAGAGAGCAGTTGCATGATCACATTAATGCCGAAATTATTTCTGGAACCATTTGCCATAAACAAG
             gcctaat  putative branch site (score: 3)
                              tactgttttctctttt  putative PPT
                                          ttttatgtt  TA-rich tract