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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagattcagtgcattggccaataatactggatttacttcaaatcttcatggctctattgtttaaattttcagGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG

Basic information

species Glycine max
transcript GLYMA06G09580.1
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09580.1 (Glycine max), 3'ss of exon 20
lower sequence: LOC_Os01g49940.2 (Oryza sativa), 3'ss of exon 22
---gtaaggagattcagtgcattggccaataatactggatttacttcaaatcttcatggctctattgtttaaattttc----agGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG
    |||   || |      |||    |   ||  |   ||||| |    |  || | | |  | |||||  ||| |     |||||||  |    ||| | || || ||||||||||||||||||||||| ||| |||||||||| || ||  ||
gtactaacttgactgctgttattctttacctattattcttttacatattcttctctttgattaactgtttggattgttatgtagGTTGACAATGTACCAATTCCACTTCTTTTCATGAGAACAGTTATTCAAGCACTTGATGCTTTCCCAGCTTTG

upper sequence: GLYMA06G09580.1 (Glycine max), 3'ss of exon 20
lower sequence: GRMZM2G466139_T01 (Zea mays), 3'ss of exon 19
gtaaggagatt--cagtgc-attggccaataatactggatttacttcaaatcttcatggctctattgtttaaattttcagGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG
|||   | |||  |  ||| |||||  | |  | |  |  ||  ||   |||||      |    ||       || ||||||||   ||  ||| | || || ||||| ||||||||||||||||| ||  ||||||||||||||||  ||
gtacatacattaccgctgctattgg--agttttgcgtgtctttattttcatcttgcctaataagctgaactgtcttgcagGTTGACAGAATACCAATTCCTCTTCTTTTTATGAGAACAGTTATTCAAGCGCTTGATGCTTTTCCTGCTTTG

upper sequence: GLYMA06G09580.1 (Glycine max), 3'ss of exon 20
lower sequence: AT1G27595.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaaggagattcagtgcattggccaataatactggatttacttcaaatcttcatggctctattg-tttaaattttcagGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG
    | |  |  | |    |||  || ||      ||||| || | || || |   || |  |  |||    ||||||||||||| |||||| |||||  |||| |||||| |||| ||||| |||||||| |||||||||||  |||| 
----gtatgtcaaatatcatggaaaagaacttcctatttagtt-agatattgagatctgtgatactttttggtttcagGTTGATCGAACTCCTCTGCCTTTACTCTTCATGCGAACGGTTATCCAGGCAATCGATGCTTTTCCAACACTA

upper sequence: GLYMA06G09580.1 (Glycine max), 3'ss of exon 20
lower sequence: Vv18s0001g08140.t01 (Vitis vinifera), 3'ss of exon 17
gtaaggagattcagtgcattggccaat-----aatactggatttac--ttcaaatcttcatggctctattgt-ttaaattttcagGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG
||| |   |    || |||| || | |     | || |||| |||   || | |||||  | |   ||   | |  ||||||||||||||||| |||||| |||| ||||| |||||||||||||| ||||||||||||||||||| |||| | |||
gtatgtgaaagttgtccatttgcaattctgaaattattggacttaaaattaatatcttgcttgtagtaacctatccaattttcagGTTGATCATACTCCATTGCCTCTACTCTTCATGAGAACAGTAATTCAGGCAATTGATGCTTATCCTACCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaataatactggatttacttcaaatcttcatggctctattgtttaaattttcagGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTG
                                                ttttc  CT-rich tract
                                   tctattgtttaaattt  TA-rich tract