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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggggccatactctgcttttctcaatcttctgatatgctcaagctgtcatgcatatctttttcctctgtactaattgtctgttaatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG

Basic information

species Glycine max
transcript GLYMA05G28950.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015090|gb|CX701832.1|CX701832
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|23733694|gb|BU765054.1|BU765054
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATATT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|213597745|gb|DB964482.1|DB964482
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|51343620|gb|CO984353.1|CO984353
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|298166149|gb|HO009120.1|HO009120
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|58016994|gb|CX703736.1|CX703736
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|9258815|gb|BE346962.1|BE346962
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|14008648|gb|BG725252.1|BG725252
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|254327539|gb|GR837148.1|GR837148
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|57575075|gb|CX548050.1|CX548050
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
EST: gi|51338442|gb|CO982308.1|CO982308
EST:     TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAG                         GTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT
genomic: TTGATTGAGGCCAAAGTTGTGCATGATCAACTTTGTTCAATGGCTGAGAGgttaggggcc ... taatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaagctgtcatgcatatctttttcctctgtactaattgtctgttaatctgcagGTCTGACAGTGAGCTGTTGGGCCCAAACAATCAGTACCTTCCAAAAATAGTTTCAGTGTTTGCTGAG
               atatcttttt  TA-rich tract