1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtaatatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG
species | Glycine max |
transcript | GLYMA05G27900.2 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|207756209|gb|GD727108.1|GD727108
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCGAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|207689117|gb|GD673470.1|GD673470
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCAEST: gi|58018465|gb|CX705207.1|CX705207
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCA
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|193671515|gb|FK612041.1|FK612041
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|7041994|gb|AW471888.1|AW471888
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|12690707|gb|BG157043.1|BG157043
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: TTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|193716731|gb|FK654289.1|FK654289
genomic: TTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: ATAAACATGAATTACAGAATTCTTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|193673103|gb|FK618965.1|FK618965
genomic: ATAAACATGAATTACAGAATTC-TTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAEST: gi|209703470|gb|BW678247.1|BW678247
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
EST: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAG AGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
genomic: GATAAACATGAATTACAGAATTCTTTCAGCACTCCACCATTACTCCAAAGgtaatatgga ... agtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAA
actatattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG
aactaat putative branch site (score: 2)
attttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatggactggccaaggcaaaatatctgcaaatattcccactatattttgtaccttcctctttctgaaactaatctttgggttgagtcttgtagAGAATGGGCCATATCAGGAGAAAGCTAAAGCCATCTACGAAGAATTGAGAAGCAATTTAATTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA