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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaataatacttttgataaaaagaggttgtcatattcactctttttccttctagcttttctggtctgatacgttgttttaatcatcagCTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTAGGCTCGTCAAGTATTGATGATCCTGCACAATATATCACG

Basic information

species Glycine max
transcript GLYMA05G03970.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16105762|gb|BI893502.1|BI893502
EST:     TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA
genomic: TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA
EST: gi|6845818|gb|AW348108.1|AW348108
EST:     TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA
genomic: TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA
EST: gi|33388995|gb|CA852202.1|CA852202
EST:     TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA
genomic: TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA
EST: gi|31310152|gb|CD395355.1|CD395355
EST:     TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAG                         CTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA
genomic: TGGGGCAAAGAATATTTATATTCATTGTTGGTGGAGCGACCAGATCTGAGgtttgaataa ... taatcatcagCTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcactctttttccttctagcttttctggtctgatacgttgttttaatcatcagCTTAGGATATGCCACAAGCTTACTGGCAAGCTGAAGAGGGAAGTTATACTAGGCTCGTCAAGTATTGATGATCCTGCACAATATATCACG
                                          ttttaat  putative branch site (score: 3)
                                       ttgtttt  CT-rich tract
                                       ttgttttaat  TA-rich tract