1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...aaatgattgttgttggatcccttacattttcttgaacattagctttccatgtacaacctttttctgtagcaatagtgagcatgattttaatcctaagcagGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTAC
species | Glycine max |
transcript | GLYMA04G41500.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATG GTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGEST: gi|51345213|gb|CO985946.1|CO985946
genomic: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATGgtatgaatgt ... tcctaagcagGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGG
EST: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATG GTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGEST: gi|9204124|gb|BE330348.1|BE330348
genomic: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATGgtatgaatgt ... tcctaagcagGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGG
EST: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATG GTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATNTGAGGEST: gi|51336033|gb|CO979899.1|CO979899
genomic: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATGgtatgaatgt ... tcctaagcagGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGG
EST: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATG GTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGG
genomic: TACATGAATGGGGCCTCTTTGCACGAAGAAATATTCAAGAAGGAGACATGgtatgaatgt ... tcctaagcagGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGG
tccatgtacaacctttttctgtagcaatagtgagcatgattttaatcctaagcagGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTAC
ttttaat putative branch site (score: 3)
atgattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgattgttgttggatcccttacattttcttgaacattagctttccatgtacaacctttttctgtagcaatagtgagcatgattttaatcctaagcagGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCATTGCAGATTTGAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - gttgttg
- - - - - - - - - cccttac
- - - - - - - - - - - - - - - cttgaac
- - - - - - - - - - - - - - - - - - - - - - - -catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgat