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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtagttgtgctgtttctgttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG

Basic information

species Glycine max
transcript GLYMA04G00430.1
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 20
lower sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 21
gttggtagttgtgctgttt---ctgttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG
|||   ||||   ||  ||    ||  || ||   | | |  |  |  | |  |||| | |      ||  | |||| | |||  |||||  |||  ||||| ||||||||||| ||| | ||||||||||||||||| || || || | |||  |||||||||||   ||||| || |||
gttttgagttcatctagttactttgacatccatagacatgttacaatctta--tgatttattgaagctttctctttggatttc--agCCGGAGAAGCTATGGTTTTCTATTTGACTGGCTCTATCCTGCACACATGCCACTCCTTTTGAGAGGGGTCTCACATTGGTTCGACACACCAGAG

upper sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 20
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 22
gttggtagttgtgctgtttctg--ttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG
||| | |  | |||| ||| ||  || ||||     |   ||||   | ||| | ||| | | ||||   | |   |   | | |||||  |||| || ||  |||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||||| || || || |||
gtttgcacgtatgctatttttgggttcttcattgtcaactaagg---tcaaccggtct-tatattttctgtctgaatgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG
                  aactgat  putative branch site (score: 3)
                                                ttctt  putative PPT
                                tttttcatatttgtaa  TA-rich tract