Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   
15  
 5'  3'   
16  
 5'  3'   
17  
 5'  3'   
18  
 5'  3'   
19  
 5'  3'   
20  
 5'  3'   
21  
 5'  3'   
22  
 5'  3'   
23  
 5'  3'   
24  
 5'  3'   
25  
 5'  3'   
26  
 5'  3'   
27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtagttgtgctgtttctgttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG

Basic information

species Glycine max
transcript GLYMA04G00430.1
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 20
lower sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 21
gttggtagttgtgctgttt---ctgttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG
||| |||| || || || || || | | | | | | | |||| | | || | |||| | ||| ||||| ||| ||||| ||||||||||| ||| | ||||||||||||||||| || || || | ||| ||||||||||| ||||| || |||
gttttgagttcatctagttactttgacatccatagacatgttacaatctta--tgatttattgaagctttctctttggatttc--agCCGGAGAAGCTATGGTTTTCTATTTGACTGGCTCTATCCTGCACACATGCCACTCCTTTTGAGAGGGGTCTCACATTGGTTCGACACACCAGAG

upper sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 20
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 22
gttggtagttgtgctgtttctg--ttattcaggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG
||| | | | |||| ||| || || |||| | |||| | ||| | ||| | | |||| | | | | | ||||| |||| || || |||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||||| || || || |||
gtttgcacgtatgctatttttgggttcttcattgtcaactaagg---tcaaccggtct-tatattttctgtctgaatgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcagagggaaggaattaaactgatctctctgtttttcatatttgtaattcttagCCGTCGAACGTATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCTGAG
                  aactgat  putative branch site (score: 3)
 ttctt  putative PPT
 tttttcatatttgtaa  TA-rich tract