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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcttccaacattatgaccaataccaatattatttcctttttttttcttttcctaagtttgagaatgtttaataatgggtttatgcatttcctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAATCACACTGCTGAGTACTTCACCTCA

Basic information

species Glycine max
transcript GLYMA03G35020.1
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522391|gb|BU081202.1|BU081202
EST:     ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAG                         ATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
genomic: ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAGgtatatctgt ... ctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
EST: gi|15662274|gb|BI699645.1|BI699645
EST:     ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAG                         ATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
genomic: ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAGgtatatctgt ... ctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
EST: gi|10236612|gb|BE805500.1|BE805500
EST:     ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAG                         ATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
genomic: ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAGgtatatctgt ... ctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
EST: gi|20815145|gb|BQ299623.1|BQ299623
EST:     ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAG                         ATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
genomic: ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAGgtatatctgt ... ctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
EST: gi|18040842|gb|BM309136.1|BM309136
EST:     ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAG                         ATTGTCTTGGATTCAGATGATGCCTTGGTCGGTGGCTTCAGTCGGCTCAAT
genomic: ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAGgtatatctgt ... ctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
EST: gi|5820337|gb|AI988543.1|AI988543
EST:     ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAG                         ATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT
genomic: ACAGCTATTCAGATTACAGAGTTGGCTGTTCAACCCCTGGGAAATATAAGgtatatctgt ... ctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcctaagtttgagaatgtttaataatgggtttatgcatttcctttttccagATTGTCTTGGATTCAGATGATGCCTTGTTCGGTGGCTTCAGTCGGCTCAATCACACTGCTGAGTACTTCACCTCA
                    gtttaat  putative branch site (score: 4)
                                     tgcatttcctttttcc  putative PPT
               agaatgtttaataat  TA-rich tract