1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...tattactttttaccaatctgttattcacattaaaggcttacagttatattattcagcactatgttttcgccaattttcacattttgtggatataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTACACTTACAAAGAGTTGCCACTAAAAGCATAACTTTGCATGCAGAACTTA
species | Glycine max |
transcript | GLYMA01G24530.1 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATG GATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTAEST: gi|213601992|gb|DB981884.1|DB981884
genomic: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATGgtatgatatt ... tataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTA
EST: ATTCATGCTCGAGGTCGTGTAGGAGTTGAGGGGTTGTTGACAAACAGATG GATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTAEST: gi|151398324|gb|EV268195.1|EV268195
genomic: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATGgtatgatatt ... tataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTA
EST: ATCCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATG GATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTAEST: gi|6724716|gb|AW309049.1|AW309049
genomic: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATGgtatgatatt ... tataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTA
EST: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATG GATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTAEST: gi|11117946|gb|BF219539.1|BF219539
genomic: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATGgtatgatatt ... tataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTA
EST: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATG GATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTA
genomic: ATTCATGCTCGAGGTCCTGTAGGAGTTGAGGGGTTGTTGACAAACAGATGgtatgatatt ... tataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTA
atattattcagcactatgttttcgccaattttcacattttgtggatataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTACACTTACAAAGAGTTGCCACTAAAAGCATAACTTTGCATGCAGAACTTA
aattttcacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattactttttaccaatctgttattcacattaaaggcttacagttatattattcagcactatgttttcgccaattttcacattttgtggatataatgcagGATATTGAGAGGGAGTGGGCATGTGGTTGATGGAGATCAAGGGATCAATTACACTTACAAAGAGTTGCCACTAAAAGCATAACTTTGCATGCAGAACTTA
- - - - - - - - - - - attcaca
- - - - - - - - - - - - - - - - - -gcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtg