1 5' 3' | 2 5' 3' | 3 5' 3' |
...aataaccttgacatattagattgttctttttatttattgtgttttttagccatagctttaaattttgatcattttctgagagttctgcattattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCCGATGAATTGGACAGAACCCCTGGAGAGATAC
species | Glycine max |
transcript | GLYMA20G38460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTCTCCTGTTAAG GATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGATEST: gi|151393848|gb|EV263723.1|EV263723
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctag ... tattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGAT
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGATEST: gi|192334350|gb|FK024421.1|FK024421
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctag ... tattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGAT
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGATEST: gi|193408140|gb|FK375350.1|FK375350
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctag ... tattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGAT
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGATEST: gi|254324564|gb|GR833989.1|GR833989
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctag ... tattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGAT
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGATEST: gi|193542645|gb|FK501054.1|FK501054
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctag ... tattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGAT
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGATEST: gi|208119365|gb|GD914232.1|GD914232
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctag ... tattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGAT
EST: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAG GATGTTATTGATGGGGATCTATGTGAGCAATACCCAACATTGCCAATGGAT
genomic: TGTGTGGAAGAGACCACATGGCATATAGATCTGCCTATTTTCCTGTTAAGgtatacctag ... tattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGAT
ttagccatagctttaaattttgatcattttctgagagttctgcattattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCCGATGAATTGGACAGAACCCCTGGAGAGATAC
ttttgat putative branch site (score: 4)
tttaaattttgatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaccttgacatattagattgttctttttatttattgtgttttttagccatagctttaaattttgatcattttctgagagttctgcattattgtgtagGATGTTATTGATGGGGATCTATGCGAGCAATACCCAACATTGCCAATGGATTTGCAGAGAAAAATTGCCGATGAATTGGACAGAACCCCTGGAGAGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - -ccttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctgca