1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgtgttttctttcttctcctatattttctcagtgaacaagtggagcatcaatttattcccacaatggttatgatatccataaagaattcttgattggcagATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGCATACTAAGTAATGTTTTGAGTGCAATACCGCAAGATATGGGTAGGGATG
species | Glycine max |
transcript | GLYMA20G38270.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGCCAGAGAGTTCCTGGGGATTCATCAACACTCTTTTCTGTCTTTGCG ATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGCEST: gi|209702216|gb|BW677965.1|BW677965
genomic: ATTGCCAGAGAGTTCCTGGGGATTCATCAACACTCTTTTCTGTCTTTGCGgtattattta ... tgattggcagATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGC
EST: ATTGCCAGAGAGTTCCTGGGGATTCATCAACACTCTTTTCTGTCTTTGCG ATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGC
genomic: ATTGCCAGAGAGTTCCTGGGGATTCATCAACACTCTTTTCTGTCTTTGCGgtattattta ... tgattggcagATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGC
catcaatttattcccacaatggttatgatatccataaagaattcttgattggcagATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGCATACTAAGTAATGTTTTGAGTGCAATACCGCAAGATATGGGTAGGGATG
tcttgat putative branch site (score: 4)
ttctt CT-rich tract
ataaagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgttttctttcttctcctatattttctcagtgaacaagtggagcatcaatttattcccacaatggttatgatatccataaagaattcttgattggcagATCTTTGATGGGCACAACGGTATATCTGCTGCTATTTTTGCGAAGGAAAGCATACTAAGTAATGTTTTGAGTGCAATACCGCAAGATATGGGTAGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - cttctcc
- - - - - - - - - - - - - - - agtgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaagaa